VDJdb-server: TCR specificity database web browser

The VDJdb web-server application implements a browser-based GUI for the VDJdb, a database of T-cell receptor sequences with known antigen specificities.

This documentation describes the installation and setup of VDJdb-server at your local network, as well as the REST API for the VDJdb portal.

VDJdb web-server source code and binaries are located here.

Table of Contents

• Introduction
  • Overview
• Installing VDJdb server
  • Installing binaries
  • Compiling from sources
    • Back-end dependencies
    • Front-end dependencies
    • Compiling
    • SBT console commands
• Usage
  • Command line usage
  • Advanced configuration
    • VDJdb Database configuration
    • Temporary files configuration
    • Autorization configuration
    • Annotations page configuration
    • Limits configuration
    • SQL Database configuration
• VDJdb server API
  • Accessing metadata
  • Accessing specific column info
  • Querying the database